PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID mrna20122.1-v1.0-hybrid
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Potentilleae; Fragariinae; Fragaria
Family LSD
Protein Properties Length: 113aa    MW: 11761.5 Da    PI: 8.7156
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
mrna20122.1-v1.0-hybridgenomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD124.54.6e-083171125
                  zf-LSD1 11 PrGApsVRCalCdtV 25
                             + GA+sVRC++C+tV
  mrna20122.1-v1.0-hybrid  3 TSGATSVRCSCCHTV 17
                             68************9 PP

2zf-LSD152.39.5e-173155125
                  zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                             Cg+Crt+L+YP+GApsV+Ca+C++V
  mrna20122.1-v1.0-hybrid 31 CGNCRTTLMYPYGAPSVKCAVCQFV 55
                             ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF069431.4E-5117IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010536.3E-8119IPR005735Zinc finger, LSD1-type
Gene3DG3DSA:3.30.40.106.9E-4756IPR013083Zinc finger, RING/FYVE/PHD-type
TIGRFAMsTIGR010531.4E-132858IPR005735Zinc finger, LSD1-type
PfamPF069437.3E-153155IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 113 aa     Download sequence    Send to blast
MHTSGATSVR CSCCHTVNLA PAANQFAHIN CGNCRTTLMY PYGAPSVKCA VCQFVTNVMG  60
NARVPIPVHR PSTSASMPHS QSQTVVVENP MSVDESGKLV SNVVVGVTTG KK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011460430.14e-76PREDICTED: protein LSD1
SwissprotP940773e-46LSD1_ARATH; Protein LSD1
TrEMBLA0A067KSR61e-58A0A067KSR6_JATCU; Uncharacterized protein
STRINGGLYMA08G13630.18e-56(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40273361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.72e-47LSD family protein